20 results found for: “shotgun_sequencing”.

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Shotgun sequencing

In genetics, shotgun sequencing is a method used for sequencing random DNA strands. It is named by analogy with the rapidly expanding, quasi-random shot...

Last Update: 2024-01-18T00:56:29Z Word Count : 2743 Synonim Shotgun sequencing

Metagenomics

scale and detail than before. Recent studies use either "shotgun" or PCR directed sequencing to get largely unbiased samples of all genes from all the...

Last Update: 2024-03-09T10:01:41Z Word Count : 9198 Synonim Metagenomics

RNA-Seq

RNA-Seq (named as an abbreviation of RNA sequencing) is a technique that uses next-generation sequencing to reveal the presence and quantity of RNA molecules...

Last Update: 2024-03-29T10:04:47Z Word Count : 11026 Synonim RNA-Seq

Genomics

sequencing approaches fall into two broad categories, shotgun and high-throughput (or next-generation) sequencing. Shotgun sequencing is a sequencing...

Last Update: 2024-04-17T12:16:27Z Word Count : 7518 Synonim Genomics

Genomic library

for shotgun sequencing or the study of complete genes in functional analysis. One major use of genomic libraries is hierarchichal shotgun sequencing, which...

Last Update: 2024-02-26T04:06:29Z Word Count : 3365 Synonim Genomic library

Primer walking

directed sequencing, shotgun sequencing of DNA is a more rapid sequencing strategy. There is a technique from the "old time" of genome sequencing. The underlying...

Last Update: 2023-07-11T21:29:31Z Word Count : 1168 Synonim Primer walking

Whole genome sequencing

Whole genome sequencing (WGS), also known as full genome sequencing, complete genome sequencing, or entire genome sequencing, is the process of determining...

Last Update: 2024-03-20T20:27:13Z Word Count : 9463 Synonim Whole genome sequencing

DNA sequencing

published use of whole-genome shotgun sequencing, eliminating the need for initial mapping efforts. By 2001, shotgun sequencing methods had been used to produce...

Last Update: 2024-04-07T04:34:34Z Word Count : 14413 Synonim DNA sequencing

Human Genome Project

project. Celera used a technique called whole genome shotgun sequencing, employing pairwise end sequencing, which had been used to sequence bacterial genomes...

Last Update: 2024-04-14T17:46:18Z Word Count : 7206 Synonim Human Genome Project

Cell-free fetal DNA

The main ones are (1) massively parallel shotgun sequencing (MPSS), (2) targeted massive parallel sequencing (t-MPS) and (3) single nucleotide polymorphism...

Last Update: 2024-03-28T22:28:58Z Word Count : 5793 Synonim Cell-free fetal DNA

Shotgun proteomics

is derived from shotgun sequencing of DNA which is itself named after the rapidly expanding, quasi-random firing pattern of a shotgun. The most common...

Last Update: 2024-01-12T06:01:37Z Word Count : 1660 Synonim Shotgun proteomics

Shotgun (disambiguation)

in computer science Shotgun house, a type of narrow, rectangular house Shotgun sequencing, a method of sequencing DNA Shotgunning (cold reading), a "mind-reading"...

Last Update: 2023-02-22T22:07:22Z Word Count : 382 Synonim Shotgun (disambiguation)

Environmental DNA

"Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents". PLOS ONE. 11 (9): e0161841. Bibcode:2016PLoSO..1161841P...

Last Update: 2024-03-20T03:06:02Z Word Count : 13420 Synonim Environmental DNA

Bioinformatics

to be assembled to obtain complete gene or genome sequences. The shotgun sequencing technique (used by The Institute for Genomic Research (TIGR) to sequence...

Last Update: 2024-04-17T09:22:00Z Word Count : 8426 Synonim Bioinformatics

Prenatal testing

gene-specific assay. Fetal cell-free DNA has been directly sequenced using shotgun sequencing technology. In one study, DNA was obtained from the blood plasma of...

Last Update: 2024-04-05T01:01:05Z Word Count : 8910 Synonim Prenatal testing

Microbacterium virus MuffinTheCat

2019. It was done using the Illumina shotgun sequencing method. With a total shotgun coverage (amount of sequencing material) of 824. It was during this...

Last Update: 2024-04-11T17:30:38Z Word Count : 1431 Synonim Microbacterium virus MuffinTheCat

Sequence assembly

technology used. Typically, the short fragments (reads) result from shotgun sequencing genomic DNA, or gene transcript (ESTs). The problem of sequence assembly...

Last Update: 2024-03-12T20:40:57Z Word Count : 2625 Synonim Sequence assembly

Whole genome bisulfite sequencing

bisulfite sequencing was derived as a combination of this bisulfite treatment and next-generation sequencing technology, such as shotgun sequencing. The whole...

Last Update: 2023-09-06T14:03:41Z Word Count : 2517 Synonim Whole genome bisulfite sequencing

Bacterial artificial chromosome

faster and less laborious sequencing methods like whole genome shotgun sequencing and now more recently next-gen sequencing. repE for plasmid replication...

Last Update: 2023-11-26T06:42:07Z Word Count : 925 Synonim Bacterial artificial chromosome

Microbiota

but this applies to 16S rRNA amplicon sequencing as well and is a fundamental problem. With shotgun sequencing, it can be resolved by having a high coverage...

Last Update: 2024-04-15T00:55:35Z Word Count : 7825 Synonim Microbiota

Main result

Shotgun sequencing

In genetics, shotgun sequencing is a method used for sequencing random DNA strands. It is named by analogy with the rapidly expanding, quasi-random shot grouping of a shotgun. The chain-termination method of DNA sequencing ("Sanger sequencing") can only be used for short DNA strands of 100 to 1000 base pairs. Due to this size limit, longer sequences are subdivided into smaller fragments that can be sequenced separately, and these sequences are assembled to give the overall sequence. In shotgun sequencing, DNA is broken up randomly into numerous small segments, which are sequenced using the chain termination method to obtain reads. Multiple overlapping reads for the target DNA are obtained by performing several rounds of this fragmentation and sequencing. Computer programs then use the overlapping ends of different reads to assemble them into a continuous sequence.Shotgun sequencing was one of the precursor technologies that was responsible for enabling whole genome sequencing.


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